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Re: HDFS data locality and distribution, Flink


Relevant versions: Beam 2.1, Flink 1.3.


From: Reinier Kip <rkip@xxxxxxx>
Sent: 12 March 2018 13:46:24
To: user@xxxxxxxxxxxxxxx
Subject: HDFS data locality and distribution, Flink
 

Hey all,


I'm trying to batch-process 30-ish files from HDFS, but I see that data is distributed very badly across slots. 4 out of 32 slots get 4/5ths of the data, another 3 slots get about 1/5th and a last slot just a few records. This probably triggers disk spillover on these slots and slows down the job immensely. The data has many many unique keys and processing could be done in a highly parallel manner. From what I understand, HDFS data locality governs which splits are assigned to which subtask.


  • I'm running a Beam on Flink on YARN pipeline.
  • I'm reading 30-ish files, whose records are later grouped by their millions of unique keys.
  • For now, I have 8 task managers by 4 slots. Beam sets all subtasks to have 32 parallelism.
  • Data seems to be localised to 9 out of the 32 slots, 3 out of the 8 task managers.

Does the statement of input split assignment ring true? Is the fact that data isn't redistributed an effort from Flink to have high data locality, even if this means disk spillover for a few slots/tms and idleness for others? Is there any use for parallelism if work isn't distributed anyway?


Thanks for your time, Reinier